scib
v1.1.4
Installation
User Guide
API
scib
Index
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Index
A
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B
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C
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D
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G
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H
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I
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K
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L
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M
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N
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P
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R
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S
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T
A
ari() (in module scib.metrics)
B
bbknn() (in module scib.integration)
C
cell_cycle() (in module scib.metrics)
clisi_graph() (in module scib.metrics)
cluster_optimal_resolution() (in module scib.metrics)
combat() (in module scib.integration)
D
desc() (in module scib.integration)
G
graph_connectivity() (in module scib.metrics)
H
harmony() (in module scib.integration)
hvg_batch() (in module scib.preprocessing)
hvg_intersect() (in module scib.preprocessing)
hvg_overlap() (in module scib.metrics)
I
ilisi_graph() (in module scib.metrics)
isolated_labels_asw() (in module scib.metrics)
isolated_labels_f1() (in module scib.metrics)
K
kBET() (in module scib.metrics)
L
lisi_graph() (in module scib.metrics)
M
metrics() (in module scib.metrics)
metrics_all() (in module scib.metrics)
metrics_fast() (in module scib.metrics)
metrics_slim() (in module scib.metrics)
mnn() (in module scib.integration)
module
scib.integration
N
nmi() (in module scib.metrics)
normalize() (in module scib.preprocessing)
P
pc_regression() (in module scib.metrics)
pcr() (in module scib.metrics)
pcr_comparison() (in module scib.metrics)
R
reduce_data() (in module scib.preprocessing)
S
saucie() (in module scib.integration)
scale_batch() (in module scib.preprocessing)
scanorama() (in module scib.integration)
scanvi() (in module scib.integration)
scgen() (in module scib.integration)
scib.integration
module
score_cell_cycle() (in module scib.preprocessing)
scvi() (in module scib.integration)
silhouette() (in module scib.metrics)
silhouette_batch() (in module scib.metrics)
T
trajectory_conservation() (in module scib.metrics)
trvae() (in module scib.integration)
trvaep() (in module scib.integration)
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v: v1.1.4
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